STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0330KEGG: FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein. (528 aa)    
Predicted Functional Partners:
Bccel_1081
Serine/threonine protein kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein, Tetratricopeptide repeat-containing protein, protein kinase; KEGG: hstK, serine/threonine kinase; SMART: GGDEF domain containing protein, serine/threonine protein kinase, Tetratricopeptide repeat-containing protein, GAF domain protein.
  
 0.928
Bccel_4610
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein, PAS fold-3 domain protein, response regulator receiver, Hpt domain protein; KEGG: signal transduction histidine kinase-like protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, GAF domain protein, PAS domain containing protein, response regulator receiver.
  
 
 0.907
Bccel_0327
Hypothetical protein; KEGG: chromosome segregation ATPase-like protein.
 
   
 0.898
Bccel_0332
PFAM: peptidase A24A prepilin type IV; KEGG: Flp pilus assembly protein, protease CpaA.
 
     0.886
Bccel_3403
PFAM: protein kinase, PASTA domain containing protein; KEGG: serine/threonine protein kinase with PASTA sensor(s); SMART: serine/threonine protein kinase, PASTA domain containing protein.
   
 
 0.880
Bccel_1137
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: hypothetical protein.
  
 0.849
Bccel_1175
PFAM: Tetratricopeptide repeat-containing protein; KEGG: hypothetical protein.
  
 0.849
Bccel_0331
SMART: protein phosphatase 2C domain protein; KEGG: protein serine/threonine phosphatase.
 
  
 0.845
Bccel_5049
Putative phytochrome sensor protein; TIGRFAM: diguanylate cyclase; PFAM: protein kinase, GGDEF domain containing protein; KEGG: ATPase; SMART: GGDEF domain containing protein, GAF domain protein.
  
 0.828
Bccel_0196
Putative PASTA sensor protein; PFAM: penicillin-binding protein transpeptidase, Penicillin-binding protein dimerization domain-containing protein, PASTA domain containing protein; KEGG: cell division protein FtsI/penicillin-binding protein 2; SMART: PASTA domain containing protein.
   
 
 0.822
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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