Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0356PFAM: Type II secretion system F domain-containing protein; KEGG: type II secretion system F domain-containing protein. (305 aa)    
Predicted Functional Partners:
Bccel_0352
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: Flp pilus assembly protein CpaB; SMART: SAF domain protein.
 
 
 0.990
Bccel_0353
KEGG: response regulator receiver protein; PFAM: response regulator receiver, AAA domain; SMART: response regulator receiver.
 
 
 0.989
Bccel_0355
PFAM: Type II secretion system F domain-containing protein; KEGG: type II secretion system F domain-containing protein.
 
 
0.987
Bccel_0323
PFAM: Type II secretion system F domain-containing protein; KEGG: Type II secretion system F domain.
 
 
 0.983
Bccel_0354
PFAM: type II secretion system protein E; KEGG: type II secretion system protein E.
 
 
 0.976
Bccel_0322
KEGG: type II secretion system protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
 
 0.956
Bccel_2784
PFAM: type II secretion system protein E; KEGG: Flp pilus assembly protein, ATPase CpaF.
 
 
 0.955
Bccel_0324
PFAM: Type II secretion system F domain-containing protein; KEGG: Type II secretion system F domain.
 
 
0.954
Bccel_1995
PFAM: type II secretion system protein E; KEGG: putative type II secretion system protein E.
 
 
 0.940
Bccel_0351
PFAM: TadE family protein; KEGG: TadE family protein.
 
    0.931
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.