Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0397PFAM: flavoprotein; KEGG: spoVFB, dipicolinate synthase subunit B. (98 aa)    
Predicted Functional Partners:
Bccel_0396
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; KEGG: dipicolinate synthase subunit A.
 
  
 0.983
Bccel_4165
PFAM: flavoprotein; KEGG: spoVFB, dipicolinate synthase subunit B.
 
     0.976
Bccel_0474
Hypothetical protein; KEGG: dipicolinic acid synthetase subunit B.
 
     0.974
Bccel_2024
TIGRFAM: stage IV sporulation protein B; KEGG: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB.
  
    0.661
Bccel_1876
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.605
Bccel_2589
TIGRFAM: stage V sporulation protein T, transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein; KEGG: stage V sporulation protein T; SMART: SpoVT/AbrB domain-containing protein.
  
     0.545
Bccel_2459
PFAM: GerA spore germination protein; KEGG: gerKA1, spore germination protein.
  
     0.540
Bccel_0647
PFAM: GerA spore germination protein; KEGG: spore germination protein, GerA family.
  
     0.524
Bccel_0550
PFAM: Tryptophan RNA-binding attenuator protein domain; KEGG: Tryptophan RNA-binding attenuator protein.
  
     0.511
Bccel_0398
PFAM: NUDIX hydrolase; KEGG: NUDIX hydrolase.
       0.504
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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