STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0411PFAM: sodium pump decarboxylase gamma subunit; KEGG: sodium pump decarboxylase subunit gamma. (108 aa)    
Predicted Functional Partners:
Bccel_0410
KEGG: pyruvate/oxaloacetate carboxyltransferase; PFAM: carboxylase region-containing protein, pyruvate carboxyltransferase.
    
  0.923
Bccel_0413
Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
    
  0.917
Bccel_1474
KEGG: pyruvate/oxaloacetate carboxyltransferase; PFAM: carboxylase region-containing protein, pyruvate carboxyltransferase.
    
  0.725
Bccel_0412
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: biotin/lipoyl attachment domain-containing protein.
       0.636
Bccel_1190
PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; KEGG: hypothetical protein.
    
  0.520
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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