STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0429PFAM: ABC-type transporter, periplasmic subunit; KEGG: periplasmic binding protein. (388 aa)    
Predicted Functional Partners:
Bccel_0433
PFAM: ABC-type transporter, integral membrane subunit; KEGG: ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.993
Bccel_0434
Iron-chelate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: iron (III) ABC transporter ATPase; SMART: AAA ATPase.
 
 0.989
Bccel_4612
PFAM: ABC-type transporter, integral membrane subunit; KEGG: iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.986
Bccel_4754
PFAM: ABC-type transporter, integral membrane subunit; KEGG: transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.985
Bccel_4613
Iron-chelate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: iron (III) dicitrate transport ATP-binding protein; SMART: AAA ATPase.
 
 0.971
Bccel_4753
Phosphonate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: iron ABC transporter ATPase; SMART: AAA ATPase.
 
 0.964
Bccel_4572
KEGG: ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter related protein; SMART: AAA ATPase.
  
 0.919
Bccel_0657
TIGRFAM: [FeFe]-hydrogenase system regulator TM1266; KEGG: putative iron-only hydrogenase system regulator.
  
 0.918
Bccel_0430
PFAM: Methyltransferase type 11; KEGG: methylase involved in ubiquinone/menaquinone biosynthesis.
 
 
   0.909
Bccel_0432
KEGG: ABC transporter ATPase; PFAM: ABC transporter related protein; SMART: AAA ATPase.
 
     0.775
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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