STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0449PFAM: metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: hypothetical protein. (297 aa)    
Predicted Functional Partners:
Bccel_0448
PFAM: RNA ligase, T4 RnlA-like protein; KEGG: aldehyde dehydrogenase.
       0.795
Bccel_0450
KEGG: 3' terminal RNA ribose 2'-O-methyltransferase Hen1; TIGRFAM: 3'-RNA ribose 2'-O-methyltransferase, Hen1, bacterial; PFAM: Hen1, N-terminal.
 
     0.751
Bccel_0447
Hypothetical protein.
       0.718
Bccel_0451
TIGRFAM: Polynucleotide kinase-phosphatase, bacterial; KEGG: polynucleotide 3'-phosphatase,polynucleotide 5'-hydroxyl-kinase,polynucleotide 2',3'-cyclic phosphate phosphodiesterase; PFAM: metallophosphoesterase.
 
    
0.713
Bccel_5743
KEGG: hypothetical protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.
  
     0.675
Bccel_2083
KEGG: hypothetical protein.
 
     0.651
Bccel_2440
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: phosphorylated carbohydrates phosphatase.
  
    0.483
Bccel_0452
KEGG: methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer, histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer, histidine kinase HAMP region domain protein.
       0.422
Bccel_3432
PFAM: phosphoribosyltransferase; KEGG: phosphoribosyltransferase.
  
  
 0.422
Bccel_2490
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.409
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.