STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0466KEGG: LacI family transcriptional regulator; PFAM: regulatory protein LacI; SMART: regulatory protein LacI. (323 aa)    
Predicted Functional Partners:
Bccel_3490
KEGG: glutamate synthase family protein; PFAM: ferredoxin-dependent glutamate synthase, glutamine amidotransferase class-II, glutamate synthase alpha subunit domain protein, glutamate synthase.
    
 
 0.867
Bccel_3867
KEGG: phosphotransferase system HPr (HPr) family protein; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
   
 
 0.778
Bccel_4396
KEGG: phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
   
 
 0.778
Bccel_3878
TIGRFAM: pyruvate kinase; KEGG: pyruvate kinase; PFAM: Pyruvate kinase barrel, Pyruvate kinase -like protein, PEP-utilising protein mobile region; Belongs to the pyruvate kinase family.
    
 
 0.777
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.728
Bccel_3745
Phosphotransferase system, phosphocarrier protein HPr; PFAM: phosphoryl transfer system HPr; KEGG: phosphoryl transfer system HPr.
   
 
 0.728
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.
    
   0.728
Bccel_1565
KEGG: IMP dehydrogenase/GMP reductase; PFAM: IMP dehydrogenase/GMP reductase, CBS domain containing protein.
    
 
 0.713
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: phenylalanyl-tRNA synthetase subunit beta; HAMAP : Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.701
Bccel_2814
KEGG: thioredoxin-disulfide reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain, Thioredoxin domain-containing protein; overlaps another CDS with the same product name.
  
 
 0.695
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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