STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0497KEGG: arabinogalactan endo-1,4-beta-galactosidase; PFAM: glycosyl hydrolase 53 domain protein. (342 aa)    
Predicted Functional Partners:
Bccel_5541
PFAM: glycoside hydrolase family 30; KEGG: alpha-L-arabinofuranosidase B.
  
  
 0.829
Bccel_3097
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43, Carbohydrate binding family 6; KEGG: beta-xylosidase; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.820
Bccel_1770
KEGG: Ricin B lectin; PFAM: Ricin B lectin, glycoside hydrolase family 43; SMART: Ricin B lectin.
 
  
 0.814
Bccel_3113
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43, Carbohydrate binding family 6, protein of unknown function DUF303 acetylesterase; KEGG: family 6 carbohydrate binding protein; SMART: cellulose binding type IV.
  
  
 0.812
Bccel_3115
PFAM: glycoside hydrolase family 43; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.799
Bccel_5617
PFAM: glycoside hydrolase family 43; KEGG: alpha-L-arabinofuranosidase B.
  
  
 0.793
Bccel_3083
KEGG: alpha-L-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
  
 
 0.783
Bccel_4152
KEGG: dockerin-like protein; PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen, Parallel beta-helix repeat.
  
   
 0.779
Bccel_1738
Glucan endo-1,3-beta-D-glucosidase; PFAM: glycoside hydrolase family 16, glycoside hydrolase family 43, Ricin B lectin; KEGG: Ricin B lectin; SMART: Ricin B lectin.
 
  
 0.777
Bccel_0496
KEGG: Cohesin domain protein.
       0.773
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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