STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0503KEGG: two component transcriptional regulator, LuxR family; PFAM: response regulator receiver, regulatory protein LuxR; SMART: response regulator receiver, regulatory protein LuxR. (212 aa)    
Predicted Functional Partners:
Bccel_4610
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein, PAS fold-3 domain protein, response regulator receiver, Hpt domain protein; KEGG: signal transduction histidine kinase-like protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, GAF domain protein, PAS domain containing protein, response regulator receiver.
  
 0.952
Bccel_5061
KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein, response regulator receiver, Hpt domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, response regulator receiver.
  
0.952
Bccel_0843
Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerization and phosphoacceptor region, ATP-binding region ATPase domain protein; KEGG: signal transduction histidine kinase.
 0.919
Bccel_0840
Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerization and phosphoacceptor region, ATP-binding region ATPase domain protein; KEGG: signal transduction histidine kinase.
 0.904
Bccel_0370
Putative PAS/PAC sensor protein; PFAM: histidine kinase dimerization and phosphoacceptor region, PAS fold-4 domain protein; KEGG: sensor signal transduction histidine kinase.
 0.901
Bccel_2297
KEGG: signal transduction histidine kinase; PFAM: histidine kinase dimerization and phosphoacceptor region, ATP-binding region ATPase domain protein, Cache domain protein; SMART: ATP-binding region ATPase domain protein.
 0.901
Bccel_3975
PFAM: histidine kinase dimerization and phosphoacceptor region, ATP-binding region ATPase domain protein; KEGG: signal transduction histidine kinase.
 0.901
Bccel_3966
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase dimerization and phosphoacceptor region; KEGG: sensor signal transduction histidine kinase.
 
 0.900
Bccel_1377
PFAM: ATP-binding region ATPase domain protein; KEGG: sensor signal transduction histidine kinase.
 
 0.898
Bccel_0348
KEGG: DegS sensor signal transduction histidine kinase; PFAM: Sensor DegS domain protein, ATP-binding region ATPase domain protein, histidine kinase dimerization and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein.
 0.890
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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