STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0506Hypothetical protein; KEGG: cellulose 1,4-beta-cellobiosidase. (1124 aa)    
Predicted Functional Partners:
Bccel_0722
PFAM: lipolytic protein G-D-S-L family; KEGG: glycoside hydrolase family protein.
  
 
  0.897
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
  0.891
Bccel_2462
PFAM: lipolytic protein G-D-S-L family; KEGG: glycoside hydrolase family protein.
  
 
  0.889
Bccel_5621
KEGG: G-D-S-L lipolytic protein.
  
 
  0.856
Bccel_0505
PFAM: APHP domain protein, acyltransferase 3; KEGG: PKD domain-containing protein.
      0.849
Bccel_3672
PFAM: cellulosome anchoring protein cohesin region; KEGG: cellulosome anchoring protein cohesin subunit.
  
 
   0.831
Bccel_2780
FHA domain containing protein; TIGRFAM: Type VII secretion protein EssC; PFAM: cell division FtsK/SpoIIIE, Forkhead-associated protein; KEGG: FHA domain-containing protein; SMART: Forkhead-associated protein, AAA ATPase.
 
 
 0.828
Bccel_1479
6-deoxyerythronolide-B synthase; PFAM: KR domain protein, acyl carrier protein familyprotein, Beta-ketoacyl synthase, Acyl transferase; KEGG: polyketide synthase family protein; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, acyl transferase domain-containing protein.
  
 
 0.822
Bccel_1059
KEGG: Ig domain-containing protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, APHP domain protein; SMART: Ig domain protein group 2 domain protein.
  
   0.821
Bccel_3071
Hypothetical protein; KEGG: lysophospholipase L1-like esterase.
  
 
  0.821
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.