STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0526KEGG: hypothetical protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein. (487 aa)    
Predicted Functional Partners:
Bccel_0518
Alpha-N-arabinofuranosidase; KEGG: glycoside hydrolase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
      
 0.613
Bccel_0848
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
     0.569
Bccel_2740
Hypothetical protein; KEGG: family 2 glycosyl transferase.
  
 
 0.469
Bccel_0530
PFAM: Protein of unknown function DUF2225; KEGG: hypothetical protein.
  
     0.440
Bccel_0130
Transglutaminase domain-containing protein; KEGG: Transglutaminase-like enzyme, putative cysteine protease; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
  
     0.420
Bccel_0527
Hypothetical protein; KEGG: lysophospholipase L1-like esterase.
      
0.416
Bccel_3088
PFAM: Domain of unknown function DUF3502; KEGG: carbohydrate ABC transporter substrate-binding protein.
  
     0.401
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.