Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_0551KEGG: hypothetical protein. (65 aa)    
Predicted Functional Partners:
Bccel_0550
PFAM: Tryptophan RNA-binding attenuator protein domain; KEGG: Tryptophan RNA-binding attenuator protein.
       0.743
Bccel_2047
PFAM: Protein of unknown function DUF4363; KEGG: hypothetical protein.
  
     0.698
Bccel_4042
Hypothetical protein; KEGG: Peptidase propeptide domain-containing protein.
  
     0.645
Bccel_4930
PFAM: O-antigen polymerase; KEGG: O-antigen polymerase.
  
     0.638
Bccel_0549
DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dnaE, DNA polymerase III DnaE; PFAM: DNA polymerase III alpha subunit, nucleic acid binding OB-fold tRNA/helicase-type, PHP domain protein.
       0.595
Bccel_0552
KEGG: thioesterase superfamily protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein.
       0.542
Bccel_3713
KEGG: hypothetical protein.
  
     0.541
Bccel_2395
KEGG: hypothetical protein.
  
     0.507
Bccel_4893
PFAM: protein of unknown function DUF322; KEGG: hypothetical protein.
  
     0.503
Bccel_0056
KEGG: hypothetical protein.
  
     0.499
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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