STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0555PFAM: 3D domain-containing protein; KEGG: hypothetical protein. (212 aa)    
Predicted Functional Partners:
Bccel_1016
KEGG: LysM domain-containing protein; PFAM: Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM.
  
  
 0.699
Bccel_0265
KEGG: cell wall hydrolase; PFAM: Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM.
   
  
 0.631
Bccel_0584
KEGG: LysM domain-containing protein.
   
  
 0.631
Bccel_1582
KEGG: cell wall hydrolase; PFAM: Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM.
   
  
 0.631
Bccel_0554
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cell wall/surface repeat protein.
 
     0.622
Bccel_4024
KEGG: glycoside hydrolase; PFAM: glycoside hydrolase family 18, copper amine oxidase-like domain-containing protein; SMART: chitinase II.
  
     0.530
Bccel_2451
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
   
 0.513
Bccel_5209
PFAM: protein of unknown function UPF0180; KEGG: hypothetical protein.
  
     0.452
Bccel_3915
Phosphoesterase RecJ domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
   
 0.450
Bccel_0556
KEGG: hypothetical protein.
       0.444
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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