Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0609PFAM: Protein of unknown function DUF4280; KEGG: hypothetical protein. (128 aa)    
Predicted Functional Partners:
Bccel_0585
KEGG: hypothetical protein.
 
  
 0.832
Bccel_0587
PFAM: GPW/gp25 family protein; KEGG: hypothetical protein.
 
    0.821
Bccel_0590
Phage tail protein; KEGG: hypothetical protein; TIGRFAM: phage tail protein; PFAM: tail protein I.
 
  
 0.817
Bccel_0578
KEGG: hypothetical protein.
 
    0.814
Bccel_0591
KEGG: hypothetical protein.
 
   
 0.811
Bccel_0586
PFAM: baseplate assembly protein V; KEGG: phage-related baseplate assembly protein.
 
   
 0.806
Bccel_0575
PFAM: Protein of unknown function DUF4255; KEGG: hypothetical protein.
 
     0.805
Bccel_0588
PFAM: Baseplate J family protein; KEGG: hypothetical protein.
 
     0.799
Bccel_0589
KEGG: hypothetical protein.
 
     0.797
Bccel_0580
KEGG: hypothetical protein.
 
     0.787
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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