STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0641PFAM: transposase IS66, Transposase IS66, predicted helix-turn-helix domain, Transposase TnpC, homeodomain; KEGG: hypothetical protein. (543 aa)    
Predicted Functional Partners:
Bccel_0642
PFAM: IS66 Orf2 family protein; KEGG: transposase.
 
     0.921
Bccel_2831
PFAM: IS66 Orf2 family protein; KEGG: transposase.
 
     0.781
Bccel_3465
PFAM: IS66 Orf2 family protein; KEGG: transposase.
 
     0.781
Bccel_3588
PFAM: IS66 Orf2 family protein; KEGG: IS66 Orf2 like protein.
 
     0.781
Bccel_5517
PFAM: IS66 Orf2 family protein; KEGG: transposase.
 
     0.781
Bccel_5519
PFAM: IS66 Orf2 family protein; KEGG: transposase.
 
     0.781
Bccel_0640
KEGG: hypothetical protein.
       0.773
Bccel_0643
KEGG: hypothetical protein.
       0.660
Bccel_0639
KEGG: spore germination protein, amino acid permease.
       0.551
Bccel_0644
PFAM: Spore germination protein; KEGG: spore germination protein, amino acid permease.
       0.460
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.