Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Bccel_0643KEGG: hypothetical protein. (117 aa)    
Predicted Functional Partners:
Bccel_3403
PFAM: protein kinase, PASTA domain containing protein; KEGG: serine/threonine protein kinase with PASTA sensor(s); SMART: serine/threonine protein kinase, PASTA domain containing protein.
  
 
 0.847
Bccel_0642
PFAM: IS66 Orf2 family protein; KEGG: transposase.
       0.777
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.764
Bccel_3600
KEGG: hypothetical protein.
    
 0.733
Bccel_3963
KEGG: hypothetical protein.
    
 0.733
Bccel_3406
Sun protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. Belongs to the NusB family.
  
  
 0.718
Bccel_3905
KEGG: regulatory protein MerR.
    
 0.698
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.671
Bccel_3594
KEGG: hypothetical protein.
   
 
 0.671
Bccel_0641
PFAM: transposase IS66, Transposase IS66, predicted helix-turn-helix domain, Transposase TnpC, homeodomain; KEGG: hypothetical protein.
       0.661
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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