Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0646KEGG: germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein. (386 aa)    
Predicted Functional Partners:
Bccel_0647
PFAM: GerA spore germination protein; KEGG: spore germination protein, GerA family.
 
  
 0.950
Bccel_0644
PFAM: Spore germination protein; KEGG: spore germination protein, amino acid permease.
 
  
 0.948
Bccel_0639
KEGG: spore germination protein, amino acid permease.
 
  
 0.828
Bccel_0861
KEGG: spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
 
  
 0.798
Bccel_1085
KEGG: spore germination protein, amino acid permease; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
 
  
 0.796
Bccel_0858
PFAM: GerA spore germination protein; KEGG: GerA spore germination protein.
 
  
 0.792
Bccel_1088
PFAM: GerA spore germination protein; KEGG: spore germination protein, GerA family.
 
  
 0.790
Bccel_1089
PFAM: GerA spore germination protein; KEGG: spore germination protein, GerA family.
 
  
 0.790
Bccel_1226
PFAM: GerA spore germination protein; KEGG: gerKA, spore germination protein.
 
  
 0.788
Bccel_4108
KEGG: spore germination protein, amino acid permease; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
 
  
 0.782
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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