STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0689KEGG: Dockerin type 1; PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV. (1075 aa)    
Predicted Functional Partners:
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.798
Bccel_5538
KEGG: hypothetical protein.
  
     0.770
Bccel_0857
KEGG: endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11, Carbohydrate binding family 6; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.764
Bccel_5603
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.
  
     0.763
Bccel_3806
KEGG: pectate lyase; PFAM: Pectate lyase.
  
     0.762
Bccel_0497
KEGG: arabinogalactan endo-1,4-beta-galactosidase; PFAM: glycosyl hydrolase 53 domain protein.
  
     0.751
Bccel_3064
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10, S-layer domain-containing protein; KEGG: endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.
  
     0.748
cinA
Competence-damaged protein; SMART: molybdopterin binding domain-containing protein; TIGRFAM: competence/damage-inducible protein CinA, CinA domain protein, molybdenum cofactor synthesis domain protein; KEGG: competence/damage-inducible protein CinA; HAMAP : Competence-damaged protein; PFAM: CinA domain protein, molybdopterin binding domain-containing protein.
  
 
  0.734
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.693
Bccel_4937
Mannan endo-1,4-beta-mannosidase; PFAM: Endoglucanase H/Glycosyl hydrolase family 26, Ricin B lectin; KEGG: mannan endo-1,4-beta-mannosidase; SMART: Ricin B lectin; Belongs to the glycosyl hydrolase 26 family.
  
     0.678
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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