STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0691KEGG: G-D-S-L family lipolytic protein. (213 aa)    
Predicted Functional Partners:
Bccel_4009
PFAM: glycoside hydrolase family 3 domain protein; KEGG: beta-N-acetylhexosaminidase; Belongs to the glycosyl hydrolase 3 family.
   
 0.879
Bccel_5100
Sialate O-acetylesterase; KEGG: dockerin-like protein; PFAM: protein of unknown function DUF303 acetylesterase.
 
     0.757
Bccel_2113
Sialate O-acetylesterase; KEGG: dockerin-like protein; PFAM: protein of unknown function DUF303 acetylesterase.
 
     0.755
Bccel_3125
Alpha-galactosidase; PFAM: Carbohydrate binding family 6, glycoside hydrolase clan GH-D; KEGG: family 6 carbohydrate binding protein; SMART: cellulose binding type IV.
 
  
  0.727
Bccel_0688
KEGG: dockerin-like protein.
 
   
  0.590
Bccel_3093
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10, glycoside hydrolase family 11; KEGG: beta-1,4-xylanase; SMART: glycoside hydrolase family 10; Belongs to the glycosyl hydrolase 10 (cellulase F) family.
 
 0.580
Bccel_1435
KEGG: hypothetical protein.
  
     0.561
Bccel_3151
TIGRFAM: parallel beta-helix repeat containing protein; KEGG: carbohydrate-binding cenc domain protein.
  
 
  0.536
Bccel_3077
PFAM: esterase; KEGG: family 6 carbohydrate binding protein.
 
  
 0.533
Bccel_3489
Hypothetical protein; KEGG: fibronectin type III domain-containing protein.
  
 0.527
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.