Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0705KEGG: rSAM-modified six-cysteine peptide SCIFF; TIGRFAM: Six-cysteine peptide SCIFF; PFAM: Six-cysteine peptide SCIFF. (46 aa)    
Predicted Functional Partners:
Bccel_0706
KEGG: six-Cys-in-45 modification radical SAM protein; TIGRFAM: SCIFF radical SAM maturase, 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain.
 
 
   0.973
Bccel_4750
KEGG: radical SAM protein; TIGRFAM: SCIFF radical SAM maturase, 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain.
 
 
   0.955
Bccel_1340
KEGG: radical SAM protein; TIGRFAM: 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain.
 
 
   0.905
Bccel_4214
KEGG: radical SAM domain-containing protein; TIGRFAM: 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain.
 
 
   0.893
Bccel_4212
TIGRFAM: 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein; KEGG: radical SAM domain-containing protein; SMART: Elongator protein 3/MiaB/NifB.
 
 
   0.879
Bccel_4213
TIGRFAM: 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein; KEGG: radical SAM domain-containing protein; SMART: Elongator protein 3/MiaB/NifB.
 
 
   0.875
Bccel_3968
KEGG: hypothetical protein; TIGRFAM: Radical SAM peptide maturase, CXXX-repeat target, CXXX repeat peptide maturase, 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein.
 
 
   0.816
Bccel_4006
PFAM: Rubrerythrin; KEGG: rubrerythrin.
  
   
 0.521
Bccel_0704
Hypothetical protein.
       0.489
Bccel_0703
KEGG: hypothetical protein; TIGRFAM: Protein of unknown function DUF3792, transmembrane; PFAM: Protein of unknown function DUF3792, transmembrane.
       0.437
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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