STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0732KEGG: hypothetical protein. (125 aa)    
Predicted Functional Partners:
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
   
    0.640
Bccel_0733
KEGG: hypothetical protein.
       0.610
Bccel_0731
Hypothetical protein.
       0.561
Bccel_0398
PFAM: NUDIX hydrolase; KEGG: NUDIX hydrolase.
   
    0.491
Bccel_1120
PFAM: GCN5-related N-acetyltransferase; KEGG: GCN5-related N-acetyltransferase.
  
     0.415
Bccel_1322
KEGG: aspartate/tyrosine/aromatic aminotransferase; PFAM: aminotransferase class I and II.
   
    0.410
Bccel_2262
Aspartate transaminase; KEGG: class I and II aminotransferase; PFAM: aminotransferase class I and II.
   
    0.410
Bccel_3692
KEGG: aspartate/tyrosine/aromatic aminotransferase; PFAM: aminotransferase class I and II.
   
    0.410
Bccel_0734
KEGG: hypothetical protein.
       0.409
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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