Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bccel_0799PFAM: OsmC family protein; KEGG: OsmC family protein. (137 aa)    
Predicted Functional Partners:
Bccel_0979
Acetaldehyde dehydrogenase (acetylating); KEGG: alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase, Aldehyde Dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
  0.598
Bccel_0798
PFAM: Protein of unknown function DUF3267; KEGG: hypothetical protein.
       0.558
ffh
Signal recognition 54 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
 
    0.468
Bccel_0800
PFAM: Di-glucose binding within endoplasmic reticulum, S-layer domain-containing protein; KEGG: glycoside hydrolase family 5.
       0.465
msrA
Peptide methionine sulfoxide reductase msrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.431
Bccel_2016
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: HAD-superfamily hydrolase.
     
  0.425
Bccel_4465
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1, HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: hypothetical protein.
     
  0.425
Bccel_5839
Hypothetical protein; KEGG: haloacid dehalogenase domain-containing protein hydrolase.
     
  0.425
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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