STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0824TIGRFAM: capsular exopolysaccharide family; KEGG: capsular exopolysaccharide family protein; PFAM: AAA domain. (245 aa)    
Predicted Functional Partners:
Bccel_0823
PFAM: lipopolysaccharide biosynthesis protein; KEGG: lipopolysaccharide biosynthesis protein.
 
 0.997
Bccel_0825
Protein-tyrosine-phosphatase; KEGG: capsular polysaccharide biosynthesis protein; PFAM: PHP domain protein.
 
  
 0.973
Bccel_1856
PFAM: lipopolysaccharide biosynthesis protein; KEGG: lipopolysaccharide biosynthesis protein.
 
 0.963
Bccel_1867
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
 
 0.961
Bccel_1870
KEGG: protein-tyrosine-phosphatase; PFAM: PHP domain protein.
  
 0.927
Bccel_4914
Undecaprenyl-phosphate galactose phosphotransferase; KEGG: glycosyl-1-phosphate-transferase; PFAM: sugar transferase.
 
 
 0.874
Bccel_1643
PFAM: sugar transferase; KEGG: UDP-galactose phosphate transferase.
 
 
 0.863
Bccel_2227
KEGG: competence protein ComEA; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain-containing protein.
  
 0.855
Bccel_0826
PFAM: polysaccharide biosynthesis protein CapD; KEGG: polysaccharide biosynthesis protein CapD.
  
 
 0.834
Bccel_2095
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
 
 0.830
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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