STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0848PFAM: S-layer domain-containing protein; KEGG: S-layer protein. (244 aa)    
Predicted Functional Partners:
Bccel_3110
Ricin B lectin; KEGG: surface layer protein; PFAM: Ricin B lectin; SMART: Ricin B lectin.
  
 
 0.877
Bccel_0849
PFAM: S-layer domain-containing protein; KEGG: S-layer domain-containing protein.
 
     0.823
Bccel_4964
PFAM: S-layer domain-containing protein; KEGG: S-layer protein; overlaps another CDS with the same product name.
  
 
  0.807
Bccel_0800
PFAM: Di-glucose binding within endoplasmic reticulum, S-layer domain-containing protein; KEGG: glycoside hydrolase family 5.
  
  
  0.805
Bccel_4439
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase domain-containing protein.
  
 
  0.804
Bccel_4437
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase domain-containing protein.
  
 
  0.803
Bccel_2768
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase domain-containing protein.
  
 
  0.802
Bccel_1650
PFAM: PBP domain, OmpA/MotB domain protein; KEGG: OmpA/MotB domain-containing protein.
  
 0.793
Bccel_2049
PFAM: cellulosome anchoring protein cohesin region, S-layer domain-containing protein; KEGG: cellulosome anchoring protein cohesin subunit.
  
 
  0.789
Bccel_1928
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
 
  0.787
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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