STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0872KEGG: hypothetical protein. (1259 aa)    
Predicted Functional Partners:
Bccel_0873
KEGG: hypothetical protein.
 
 0.995
Bccel_0875
KEGG: hypothetical protein.
 
 0.995
Bccel_0871
PFAM: Insecticidal toxin complex/plasmid viulence protein; KEGG: hypothetical protein.
     0.994
Bccel_0874
KEGG: hypothetical protein.
      0.974
Bccel_0870
KEGG: hypothetical protein; TIGRFAM: RHS repeat-associated core domain-containing protein; PFAM: Insecticide toxin TcdB middle/N-terminal region, Insecticide toxin TcdB middle/C-terminal region.
 
 
 0.941
Bccel_4610
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein, PAS fold-3 domain protein, response regulator receiver, Hpt domain protein; KEGG: signal transduction histidine kinase-like protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, GAF domain protein, PAS domain containing protein, response regulator receiver.
  
 0.807
scpA
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.786
Bccel_5393
KEGG: HRDC domain-containing protein; PFAM: DNA helicase PIF1, ATP-dependent, HRDC domain protein; SMART: HRDC domain protein, AAA ATPase.
  
 
 0.768
Bccel_5061
KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein, response regulator receiver, Hpt domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, response regulator receiver.
   
  0.760
Bccel_5049
Putative phytochrome sensor protein; TIGRFAM: diguanylate cyclase; PFAM: protein kinase, GGDEF domain containing protein; KEGG: ATPase; SMART: GGDEF domain containing protein, GAF domain protein.
  
 
 0.755
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.