Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0873KEGG: hypothetical protein. (400 aa)    
Predicted Functional Partners:
Bccel_0871
PFAM: Insecticidal toxin complex/plasmid viulence protein; KEGG: hypothetical protein.
 
 
 0.995
Bccel_0872
KEGG: hypothetical protein.
 
 
 0.995
Bccel_0875
KEGG: hypothetical protein.
     0.994
Bccel_0874
KEGG: hypothetical protein.
  
 
 0.978
Bccel_0870
KEGG: hypothetical protein; TIGRFAM: RHS repeat-associated core domain-containing protein; PFAM: Insecticide toxin TcdB middle/N-terminal region, Insecticide toxin TcdB middle/C-terminal region.
 
    0.927
Bccel_1137
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: hypothetical protein.
  
 0.834
Bccel_1175
PFAM: Tetratricopeptide repeat-containing protein; KEGG: hypothetical protein.
  
 0.834
Bccel_4610
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein, PAS fold-3 domain protein, response regulator receiver, Hpt domain protein; KEGG: signal transduction histidine kinase-like protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, GAF domain protein, PAS domain containing protein, response regulator receiver.
   
 0.792
Bccel_0610
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: hypothetical protein.
   
 0.780
Bccel_2000
KEGG: peptidase S41; PFAM: peptidase S41, Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41, Tetratricopeptide repeat-containing protein.
   
 0.768
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.