Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_0889KEGG: hypothetical protein. (277 aa)    
Predicted Functional Partners:
Bccel_0888
PFAM: MacB-like periplasmic core domain, protein of unknown function DUF214; KEGG: hypothetical protein.
      0.976
Bccel_0890
PFAM: protein of unknown function DUF214; KEGG: hypothetical protein.
      0.976
Bccel_0887
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.901
Bccel_0892
Phosphonate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: ABC transporter-like protein; SMART: AAA ATPase.
  
 0.882
Bccel_0891
Fe(3+)-transporting ATPase; PFAM: ABC transporter related protein; KEGG: ABC transporter-like protein; SMART: AAA ATPase.
  
 0.873
Bccel_1044
Phosphonate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: ABC transporter-like protein; SMART: AAA ATPase.
  
 0.750
Bccel_3698
Phosphonate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: antimicrobial peptide ABC transporter ATPase; SMART: AAA ATPase.
  
 0.750
Bccel_4266
Phosphonate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: hypothetical protein; SMART: AAA ATPase.
  
 0.750
potA
Polyamine-transporting ATPase; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 0.747
Bccel_1434
Phosphonate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: ABC transporter ATP-binding protein; SMART: AAA ATPase.
  
 0.747
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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