STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0893Hypothetical protein; KEGG: extracellular solute-binding protein. (378 aa)    
Predicted Functional Partners:
Bccel_3089
PFAM: ABC-type transporter, integral membrane subunit; KEGG: carbohydrate ABC transporter membrane protein 2.
 
 0.844
Bccel_2007
PFAM: ABC-type transporter, integral membrane subunit; KEGG: carbohydrate ABC transporter membrane protein 1.
  
 0.827
Bccel_2129
PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease.
  
 0.827
Bccel_2622
Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: sugar ABC transporter ATP-binding protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.824
Bccel_0894
Hypothetical protein; KEGG: extracellular solute-binding protein.
       0.773
Bccel_3088
PFAM: Domain of unknown function DUF3502; KEGG: carbohydrate ABC transporter substrate-binding protein.
  
     0.771
Bccel_0921
PFAM: Domain of unknown function DUF3502; KEGG: family 1 extracellular solute-binding protein.
  
     0.768
Bccel_3295
PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease.
 
 0.734
Bccel_3081
Hypothetical protein; KEGG: histidine kinase/HAMP domain/histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   
 0.697
Bccel_0888
PFAM: MacB-like periplasmic core domain, protein of unknown function DUF214; KEGG: hypothetical protein.
 
     0.696
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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