Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_0899Hypothetical protein; KEGG: ferredoxin. (143 aa)    
Predicted Functional Partners:
Bccel_5184
KEGG: Zn-dependent hydrolase; PFAM: beta-lactamase domain protein; SMART: beta-lactamase domain protein.
  
     0.695
Bccel_4865
KEGG: hypothetical protein.
   
    0.547
Bccel_0900
PFAM: Na+/H+ antiporter NhaC-like protein; KEGG: transporter.
       0.519
Bccel_4608
PFAM: Alcohol dehydrogenase GroES domain protein, Alcohol dehydrogenase zinc-binding domain protein; KEGG: theronine dehydrogenase-like Zn-dependent dehydrogenase.
  
     0.448
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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