Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0916PFAM: copper amine oxidase-like domain-containing protein; KEGG: glucose/sorbosone dehydrogenase-related. (387 aa)    
Predicted Functional Partners:
Bccel_1567
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein, Pyruvate/ketoisovalerate oxidoreductase, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein.
    
 0.787
Bccel_3831
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, Pyruvate/ketoisovalerate oxidoreductase, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein, Transketolase domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein.
    
 0.787
Bccel_3878
TIGRFAM: pyruvate kinase; KEGG: pyruvate kinase; PFAM: Pyruvate kinase barrel, Pyruvate kinase -like protein, PEP-utilising protein mobile region; Belongs to the pyruvate kinase family.
    
  0.771
Bccel_2551
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase domain-containing protein.
  
     0.767
Bccel_4964
PFAM: S-layer domain-containing protein; KEGG: S-layer protein; overlaps another CDS with the same product name.
  
     0.764
Bccel_0334
PFAM: S-layer domain-containing protein; KEGG: NLP/P60 protein.
  
     0.763
Bccel_4630
PFAM: S-layer domain-containing protein; KEGG: hypothetical protein.
 
     0.760
Bccel_2102
PFAM: S-layer domain-containing protein; KEGG: cellulosome anchoring protein cohesin subunit.
  
     0.754
Bccel_5646
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
   
 0.754
Bccel_1026
PFAM: cellulosome anchoring protein cohesin region, S-layer domain-containing protein; KEGG: hypothetical protein.
  
     0.753
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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