STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0927KEGG: hypothetical protein. (529 aa)    
Predicted Functional Partners:
Bccel_3252
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: hypothetical protein.
  
 
 0.849
Bccel_3259
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.849
Bccel_3275
TIGRFAM: uroporphyrin-III C-methyltransferase; KEGG: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrinogen III synthase HEM4, Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
 
 0.766
Bccel_3906
PFAM: phosphoribosyltransferase; KEGG: phosphoribosyltransferase.
  
    0.663
Bccel_0928
PFAM: copper amine oxidase-like domain-containing protein, peptidase domain protein; KEGG: copper amine oxidase-like domain-containing protein.
       0.608
Bccel_0979
Acetaldehyde dehydrogenase (acetylating); KEGG: alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase, Aldehyde Dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.589
Bccel_1739
KEGG: hypothetical protein.
  
    0.570
Bccel_3851
KEGG: hypothetical protein.
  
    0.570
Bccel_2398
PFAM: phosphoesterase PA-phosphatase related protein; KEGG: PAP2 superfamily protein.
    
 0.538
Bccel_4531
KEGG: L-amino-acid oxidase; PFAM: amine oxidase.
  
 
 0.526
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.