Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0931PFAM: protein of unknown function DUF421; KEGG: hypothetical protein. (231 aa)    
Predicted Functional Partners:
Bccel_0932
PFAM: Protein of unknown function DUF4363.
       0.757
Bccel_3862
KEGG: stage V sporulation protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
 
  
 0.644
Bccel_3861
KEGG: stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
  
 0.639
Bccel_3860
KEGG: stage V sporulation protein AE; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein.
 
   
 0.636
Bccel_4112
PFAM: GerA spore germination protein; KEGG: spore germination protein KA.
 
   
 0.599
Bccel_0315
KEGG: sporulation protein YtfJ; TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ.
  
     0.570
Bccel_4099
PFAM: GerA spore germination protein; KEGG: Na+/proline symporter.
 
   
 0.570
Bccel_1089
PFAM: GerA spore germination protein; KEGG: spore germination protein, GerA family.
 
   
 0.566
Bccel_2459
PFAM: GerA spore germination protein; KEGG: gerKA1, spore germination protein.
 
   
 0.566
Bccel_4107
PFAM: GerA spore germination protein; KEGG: Na+/proline symporter.
 
   
 0.558
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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