Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0993Two component transcriptional regulator, AraC family; KEGG: response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PFAM: response regulator receiver, Helix-turn-helix, AraC domain-containing protein; SMART: Helix-turn-helix, AraC domain-containing protein, response regulator receiver. (547 aa)    
Predicted Functional Partners:
Bccel_0994
KEGG: integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase internal region, histidine kinase HAMP region domain protein, ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein, ATP-binding region ATPase domain protein.
 
 
 0.962
Bccel_3103
Integral membrane sensor signal transduction histidine kinase; KEGG: histidine kinase internal region; PFAM: histidine kinase internal region, ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein, ATP-binding region ATPase domain protein.
 
 
 0.920
Bccel_1728
KEGG: signal transduction histidine kinase, lyts; PFAM: histidine kinase internal region, ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein.
 
 
 0.894
Bccel_4610
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein, PAS fold-3 domain protein, response regulator receiver, Hpt domain protein; KEGG: signal transduction histidine kinase-like protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, GAF domain protein, PAS domain containing protein, response regulator receiver.
   
 0.864
Bccel_3645
CheC, phosphatase, inhibitor of MCP methylation; KEGG: flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein, CheC domain protein.
  
 0.859
Bccel_0995
PFAM: extracellular solute-binding protein family 1; KEGG: extracellular solute-binding protein, family 1.
 
   
 0.853
Bccel_5061
KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein, response regulator receiver, Hpt domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, response regulator receiver.
   
 0.835
Bccel_4834
KEGG: cheA2, chemotaxis protein histidine kinase CheA2; PFAM: response regulator receiver, Hpt domain protein, ATP-binding region ATPase domain protein, Signal transducing histidine kinase homodimeric, CheW domain protein; SMART: response regulator receiver, Hpt domain protein, CheW domain protein, ATP-binding region ATPase domain protein.
  
 0.824
Bccel_3080
KEGG: histidine kinase/HAMP domain/histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PFAM: histidine kinase internal region, ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
 
 0.812
Bccel_1210
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, PAS fold-3 domain protein, response regulator receiver, PAS domain containing protein, histidine kinase A domain protein; KEGG: PAS domain-containing protein; SMART: ATP-binding region ATPase domain protein, PAC repeat-containing protein, response regulator receiver, histidine kinase A domain protein, PAS domain containing protein.
   
 0.807
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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