Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_1002TIGRFAM: metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase 7TM intracellular region, metal-dependent phosphohydrolase 7TM extracellular region, metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: putative domain HDIG-containing protein; SMART: metal-dependent phosphohydrolase HD region. (725 aa)    
Predicted Functional Partners:
Bccel_1003
PFAM: PhoH family protein; KEGG: PhoH family protein.
     
 0.734
Bccel_1004
KEGG: sporulation protein YqfD; TIGRFAM: sporulation protein YqfD; PFAM: stage IV sporulation YqfD.
       0.708
ybeY
Metalloprotease ybeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.687
Bccel_1000
PFAM: diacylglycerol kinase; KEGG: diacylglycerol kinase.
 
     0.654
Bccel_1005
KEGG: sporulation protein YqfC; TIGRFAM: sporulation protein YqfC; PFAM: Sporulation protein YabP/YqfC.
       0.610
dacA
Conserved hypothetical protein CHP00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.490
Bccel_0999
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
       0.465
Bccel_1006
PFAM: polysaccharide deacetylase; KEGG: polysaccharide deacetylase; overlaps another CDS with the same product name.
       0.432
Bccel_1007
PFAM: polysaccharide deacetylase; KEGG: putative xylanase/chitin deacetylase; overlaps another CDS with the same product name.
       0.428
era
GTP-binding protein Era-like-protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.403
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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