STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1007PFAM: polysaccharide deacetylase; KEGG: putative xylanase/chitin deacetylase; overlaps another CDS with the same product name. (158 aa)    
Predicted Functional Partners:
Bccel_1006
PFAM: polysaccharide deacetylase; KEGG: polysaccharide deacetylase; overlaps another CDS with the same product name.
     0.992
Bccel_1005
KEGG: sporulation protein YqfC; TIGRFAM: sporulation protein YqfC; PFAM: Sporulation protein YabP/YqfC.
 
  
 0.683
Bccel_1004
KEGG: sporulation protein YqfD; TIGRFAM: sporulation protein YqfD; PFAM: stage IV sporulation YqfD.
 
   
 0.653
Bccel_3397
KEGG: peptidoglycan N-acetylglucosamine deacetylase; PFAM: polysaccharide deacetylase, glycoside hydrolase family 18; SMART: chitinase II.
  
 
 0.615
Bccel_1249
Hypothetical protein; KEGG: family 2 glycosyl transferase.
  
 
 0.606
Bccel_2740
Hypothetical protein; KEGG: family 2 glycosyl transferase.
  
 
 0.606
Bccel_4196
PFAM: type IV pilus assembly PilZ; KEGG: family 2 glycosyl transferase.
  
 
 0.606
Bccel_2039
KEGG: stage III sporulation protein AG.
  
    0.545
Bccel_3922
PFAM: peptidase U57 YabG; KEGG: sporulation peptidase YabG.
  
     0.507
Bccel_0386
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.502
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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