STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1016KEGG: LysM domain-containing protein; PFAM: Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM. (95 aa)    
Predicted Functional Partners:
Bccel_3590
PFAM: protein of unknown function DUF1508; KEGG: hypothetical protein.
  
   0.918
Bccel_0587
PFAM: GPW/gp25 family protein; KEGG: hypothetical protein.
  
   0.887
Bccel_0261
KEGG: Phage tail sheath protein.
  
 
 0.851
Bccel_0578
KEGG: hypothetical protein.
  
 
 0.851
Bccel_1586
KEGG: Phage tail sheath protein.
  
 
 0.851
Bccel_0268
PFAM: Phage-like element PBSX protein, XkdS; KEGG: Phage-like element PBSX protein, XkdS.
  
   0.848
Bccel_1579
PFAM: Phage-like element PBSX protein, XkdS; KEGG: Phage-like element PBSX protein, XkdS.
  
   0.848
Bccel_0269
PFAM: Baseplate J family protein; KEGG: baseplate J.
  
 
 0.840
Bccel_0588
PFAM: Baseplate J family protein; KEGG: hypothetical protein.
  
 
 0.840
Bccel_0589
KEGG: hypothetical protein.
  
 
 0.840
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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