STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1102PFAM: glycoside hydrolase family 9; KEGG: Dockerin domain protein. (183 aa)    
Predicted Functional Partners:
Bccel_1103
Cellulose 1,4-beta-cellobiosidase; KEGG: putative carbohydrate binding protein,dockerin-like protein; PFAM: glycoside hydrolase family 9, Carbohydrate-binding CenC domain protein.
     0.950
Bccel_3943
PFAM: glycoside hydrolase family 5; KEGG: endoglucanase.
 
 
 0.845
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 0.837
Bccel_0991
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.835
Bccel_4191
KEGG: glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5, cellulose-binding family II; SMART: Carbohydrate binding domain CBM49, cellulose-binding family II.
 
 
 0.814
Bccel_2735
Cellulose 1,4-beta-cellobiosidase; KEGG: putative carbohydrate binding protein,dockerin-like protein; PFAM: glycoside hydrolase family 9, Carbohydrate-binding CenC domain protein.
 
     0.798
Bccel_3618
Cellulose 1,4-beta-cellobiosidase; KEGG: putative carbohydrate binding protein,dockerin-like protein; PFAM: glycoside hydrolase family 9, Carbohydrate-binding CenC domain protein.
 
     0.779
Bccel_0722
PFAM: lipolytic protein G-D-S-L family; KEGG: glycoside hydrolase family protein.
 
 0.769
Bccel_3806
KEGG: pectate lyase; PFAM: Pectate lyase.
  
  0.694
Bccel_0522
Cellulase; PFAM: glycoside hydrolase family 9, type 3a cellulose-binding domain protein; KEGG: glycoside hydrolase; SMART: type 3a cellulose-binding domain protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
 0.691
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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