STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1108Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11, Carbohydrate binding family 6, polysaccharide deacetylase; KEGG: xynA, endo-1,4-beta-xylanase A; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 11 (cellulase G) family. (729 aa)    
Predicted Functional Partners:
Bccel_1262
PFAM: lipolytic protein G-D-S-L family; KEGG: cellulose-binding family II protein.
 
  
 0.783
Bccel_3806
KEGG: pectate lyase; PFAM: Pectate lyase.
  
   
 0.770
Bccel_5635
KEGG: BNR/Asp-box repeat protein,dockerin-like protein.
  
     0.755
Bccel_4937
Mannan endo-1,4-beta-mannosidase; PFAM: Endoglucanase H/Glycosyl hydrolase family 26, Ricin B lectin; KEGG: mannan endo-1,4-beta-mannosidase; SMART: Ricin B lectin; Belongs to the glycosyl hydrolase 26 family.
  
  
 0.746
Bccel_2491
Mannan endo-1,4-beta-mannosidase; KEGG: endoglucanase; PFAM: glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.744
Bccel_4152
KEGG: dockerin-like protein; PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen, Parallel beta-helix repeat.
  
   
 0.744
Bccel_1006
PFAM: polysaccharide deacetylase; KEGG: polysaccharide deacetylase; overlaps another CDS with the same product name.
  
     0.741
Bccel_3064
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10, S-layer domain-containing protein; KEGG: endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.
  
   
 0.740
Bccel_5603
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.
 
   
 0.740
Bccel_2492
Mannan endo-1,4-beta-mannosidase, Cellulase; KEGG: celN, glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5.
  
  
 0.735
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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