STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1177PFAM: RNA-directed DNA polymerase (Reverse transcriptase), Group II intron maturase-specific domain protein; KEGG: RNA-directed DNA polymerase. (625 aa)    
Predicted Functional Partners:
Bccel_5386
Hypothetical protein; KEGG: Reverse transcriptase/maturase family protein.
  
     0.774
cas2
CRISPR associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
   
 
 0.716
Bccel_5146
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: RNA-directed DNA polymerase.
  
     0.711
Bccel_5145
PFAM: Domain X; KEGG: RNA-directed DNA polymerase.
     0.679
Bccel_5355
PFAM: transposase IS66, Transposase IS66, predicted helix-turn-helix domain; KEGG: transposase.
  
     0.424
Bccel_2864
PFAM: transposase IS66, Transposase IS66, predicted helix-turn-helix domain; KEGG: transposase.
  
     0.416
Bccel_3445
Hypothetical protein; KEGG: transposase.
  
     0.406
Bccel_3446
PFAM: transposase IS66; KEGG: transposase.
  
     0.402
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.