STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1195PFAM: Ppx/GppA phosphatase, metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: ppx, ppx1. (520 aa)    
Predicted Functional Partners:
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.992
Bccel_3383
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
 
 0.827
Bccel_4671
PFAM: Polyphosphate kinase-2-related; KEGG: hypothetical protein.
 
  
 0.796
Bccel_5863
KEGG: RelA/SpoT protein; PFAM: RelA/SpoT domain protein; SMART: RelA/SpoT domain protein.
     
 0.776
Bccel_1196
KEGG: hypothetical protein.
       0.741
Bccel_1657
KEGG: hypothetical protein.
  
 
 0.706
Bccel_2985
Hypothetical protein; KEGG: guanosine polyphosphate pyrophosphohydrolase.
  
 
 0.706
Bccel_1565
KEGG: IMP dehydrogenase/GMP reductase; PFAM: IMP dehydrogenase/GMP reductase, CBS domain containing protein.
     
 0.564
Bccel_2600
KEGG: flagellar hook-basal body protein; TIGRFAM: flagellar basal-body rod protein FlgG, flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body rod protein.
    
   0.540
Bccel_2601
KEGG: flagellar hook-basal body protein; TIGRFAM: flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body rod protein.
    
   0.540
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.