STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1288PFAM: copper amine oxidase-like domain-containing protein, transglutaminase domain-containing protein, Leucine rich repeat 4; KEGG: copper amine oxidase family protein,Leucine Rich Repeat (LRR)-containing protein,Transglutaminase-like superfamily protein. (453 aa)    
Predicted Functional Partners:
Bccel_5381
PFAM: S-layer domain-containing protein, Leucine rich repeat 4, EF-Hand domain protein; KEGG: putative surface layer protein.
  
  
  0.766
Bccel_1292
PFAM: S-layer domain-containing protein, leucine-rich repeat-containing protein; KEGG: S-layer domain-containing protein.
 
     0.713
Bccel_1293
PFAM: leucine-rich repeat-containing protein; KEGG: small GTP-binding protein.
 
     0.666
Bccel_4964
PFAM: S-layer domain-containing protein; KEGG: S-layer protein; overlaps another CDS with the same product name.
  
  
  0.660
Bccel_1367
PFAM: S-layer domain-containing protein, Cadherin-like beta sandwich domain, APHP domain protein; KEGG: Ig domain-containing protein.
  
  
  0.645
Bccel_2919
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
 
  
  0.643
Bccel_0665
KEGG: hypothetical protein; PFAM: PA14 domain protein, S-layer domain-containing protein; SMART: PA14 domain protein.
  
     0.636
Bccel_4473
PFAM: S-layer domain-containing protein; KEGG: dockerin-like protein.
  
     0.635
Bccel_1026
PFAM: cellulosome anchoring protein cohesin region, S-layer domain-containing protein; KEGG: hypothetical protein.
  
     0.630
Bccel_0334
PFAM: S-layer domain-containing protein; KEGG: NLP/P60 protein.
  
     0.626
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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