STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1567SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein, Pyruvate/ketoisovalerate oxidoreductase, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein. (1173 aa)    
Predicted Functional Partners:
Bccel_0127
2-oxoglutarate synthase; KEGG: 2-oxoacid:ferredoxin oxidoreductase subunit beta; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein.
  
 0.999
Bccel_3831
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, Pyruvate/ketoisovalerate oxidoreductase, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein, Transketolase domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein.
 
0.999
Bccel_0126
3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); KEGG: pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
 0.998
Bccel_5574
KEGG: hypothetical protein.
  
 
 0.998
Bccel_0128
PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: 2-oxoacid:ferredoxin oxidoreductase subunit gamma.
  
 0.997
Bccel_0855
KEGG: 2-oxoacid:ferredoxin oxidoreductase subunit gamma; PFAM: Pyruvate/ketoisovalerate oxidoreductase.
  
 0.997
Bccel_1334
KEGG: indolepyruvate ferredoxin oxidoreductase subunit beta; PFAM: Pyruvate/ketoisovalerate oxidoreductase; overlaps another CDS with the same product name.
  
 0.997
Bccel_5052
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: Formate hydrogenlyase subunit 7.
  
 0.996
Bccel_4953
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: hypothetical protein.
  
 0.995
Bccel_4674
PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; KEGG: carbon monoxide dehydrogenase-like protein, corrinoid/iron-sulfur protein.
  
 0.992
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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