STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1576Hypothetical protein. (190 aa)    
Predicted Functional Partners:
Bccel_1577
PFAM: Protein of unknown function DUF2313; KEGG: hypothetical protein.
       0.773
Bccel_1578
PFAM: Baseplate J family protein; KEGG: baseplate J.
       0.752
Bccel_1579
PFAM: Phage-like element PBSX protein, XkdS; KEGG: Phage-like element PBSX protein, XkdS.
       0.752
Bccel_1580
PFAM: Protein of unknown function, DUF2577; KEGG: hypothetical protein.
       0.752
Bccel_1581
Hypothetical protein; KEGG: phage integrase SAM domain-containing protein.
       0.721
Bccel_1582
KEGG: cell wall hydrolase; PFAM: Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM.
       0.721
Bccel_1583
TIGRFAM: phage tape measure protein; KEGG: phage tape measure protein.
       0.721
Bccel_1575
Hypothetical protein.
       0.427
Bccel_1584
PFAM: XkdN-like protein; KEGG: XkdN-like protein.
       0.411
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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