STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1631TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: carbon monoxide dehydrogenase; PFAM: Prismane. (585 aa)    
Predicted Functional Partners:
Bccel_1567
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein, Pyruvate/ketoisovalerate oxidoreductase, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein.
   
 0.989
Bccel_3831
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, Pyruvate/ketoisovalerate oxidoreductase, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein, Transketolase domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein.
    
 0.922
Bccel_4755
PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: formylmethanofuran dehydrogenase subunit E.
  
  
  0.862
Bccel_0982
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NADH:ubiquinone oxidoreductase 24 kD subunit.
   
 0.861
Bccel_4674
PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; KEGG: carbon monoxide dehydrogenase-like protein, corrinoid/iron-sulfur protein.
 
  
 0.853
Bccel_4255
KEGG: sulfite reductase, subunit C; TIGRFAM: sulfite reductase, subunit C; PFAM: nitrite and sulfite reductase 4Fe-4S region, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
  
  
 0.829
Bccel_3691
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: 4Fe-4S ferredoxin.
    
 0.821
Bccel_1505
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: BFD/(2Fe-2S)-binding domain-containing protein.
  
 
 0.815
Bccel_3315
PFAM: nitrite and sulfite reductase 4Fe-4S region, nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: nitrite and sulfite reductase 4Fe-4S region.
  
  
 0.759
Bccel_4235
KEGG: nickel-dependent hydrogenase large subunit; PFAM: nickel-dependent hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
    
 0.729
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.