STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1729KEGG: two component transcriptional regulator, arac family; PFAM: response regulator receiver, Helix-turn-helix, AraC domain-containing protein; SMART: response regulator receiver, Helix-turn-helix, AraC domain-containing protein. (289 aa)    
Predicted Functional Partners:
Bccel_1728
KEGG: signal transduction histidine kinase, lyts; PFAM: histidine kinase internal region, ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein.
 
 0.939
Bccel_4610
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein, PAS fold-3 domain protein, response regulator receiver, Hpt domain protein; KEGG: signal transduction histidine kinase-like protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, GAF domain protein, PAS domain containing protein, response regulator receiver.
   
 0.870
Bccel_4834
KEGG: cheA2, chemotaxis protein histidine kinase CheA2; PFAM: response regulator receiver, Hpt domain protein, ATP-binding region ATPase domain protein, Signal transducing histidine kinase homodimeric, CheW domain protein; SMART: response regulator receiver, Hpt domain protein, CheW domain protein, ATP-binding region ATPase domain protein.
  
 0.868
Bccel_3646
KEGG: flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM, surface presentation of antigens (SPOA) protein.
  
 0.859
Bccel_3645
CheC, phosphatase, inhibitor of MCP methylation; KEGG: flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein, CheC domain protein.
  
 0.844
Bccel_5061
KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein, response regulator receiver, Hpt domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, response regulator receiver.
   
 0.830
Bccel_1542
KEGG: histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
 
 0.818
Bccel_2067
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein; KEGG: PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein, PAS domain containing protein, histidine kinase A domain protein.
 
 
 0.804
Bccel_0617
Integral membrane sensor hybrid histidine kinase; KEGG: sensor protein; PFAM: response regulator receiver, ATP-binding region ATPase domain protein, histidine kinase A domain protein, Diverse 7TM receptor transmembrane region, histidine kinase internal region; SMART: response regulator receiver, histidine kinase A domain protein, ATP-binding region ATPase domain protein.
  
 0.799
Bccel_3103
Integral membrane sensor signal transduction histidine kinase; KEGG: histidine kinase internal region; PFAM: histidine kinase internal region, ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein, ATP-binding region ATPase domain protein.
 
 0.792
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.