STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1738Glucan endo-1,3-beta-D-glucosidase; PFAM: glycoside hydrolase family 16, glycoside hydrolase family 43, Ricin B lectin; KEGG: Ricin B lectin; SMART: Ricin B lectin. (844 aa)    
Predicted Functional Partners:
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.806
Bccel_0497
KEGG: arabinogalactan endo-1,4-beta-galactosidase; PFAM: glycosyl hydrolase 53 domain protein.
 
  
 0.777
Bccel_0722
PFAM: lipolytic protein G-D-S-L family; KEGG: glycoside hydrolase family protein.
 
  
 0.763
Bccel_3091
KEGG: Alpha-L-arabinofuranosidase B (ABFB); PFAM: alpha-L-arabinofuranosidase B, Anti-sigma factor RsgI, N-terminal, beta and gamma crystallin; SMART: beta and gamma crystallin.
 
 0.730
Bccel_5603
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.
 
  
 0.693
Bccel_3422
Transcriptional regulator with cupin sensor, AraC family; PFAM: glycoside hydrolase family 39, Helix-turn-helix, AraC domain-containing protein, Cupin 2 conserved barrel domain protein; KEGG: AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain-containing protein.
    
 0.654
Bccel_1805
KEGG: carbohydrate-binding CenC domain-containing protein; PFAM: coagulation factor 5/8 type domain protein, Carbohydrate binding family 6, type 3a cellulose-binding domain protein, Carbohydrate-binding CenC domain protein, von Willebrand factor type A; SMART: type 3a cellulose-binding domain protein, coagulation factor 5/8 type domain protein.
  
     0.653
Bccel_0857
KEGG: endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11, Carbohydrate binding family 6; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
  
 0.636
Bccel_3121
Hypothetical protein; KEGG: carbohydrate-binding family 6 protein.
 
  
 0.634
Bccel_5538
KEGG: hypothetical protein.
  
  
 0.627
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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