STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1878PFAM: protein of unknown function DUF894 DitE; KEGG: major facilitator superfamily protein. (413 aa)    
Predicted Functional Partners:
Bccel_1504
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.627
Bccel_5564
Methionine synthase; PFAM: homocysteine S-methyltransferase, cobalamin B12-binding domain protein, Methionine synthase B12-binding module cap domain protein, dihydropteroate synthase DHPS; KEGG: homocysteine S-methyltransferase; SMART: Methionine synthase B12-binding module cap domain protein.
   
 
  0.627
Bccel_1479
6-deoxyerythronolide-B synthase; PFAM: KR domain protein, acyl carrier protein familyprotein, Beta-ketoacyl synthase, Acyl transferase; KEGG: polyketide synthase family protein; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, acyl transferase domain-containing protein.
  
 
 0.555
Bccel_2229
6-deoxyerythronolide-B synthase, 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Acyl transferase, Beta-ketoacyl synthase, KR domain protein, acyl carrier protein familyprotein; KEGG: polyketide synthase family protein; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, acyl transferase domain-containing protein.
  
 
 0.555
Bccel_1879
PFAM: protein of unknown function DUF6 transmembrane; KEGG: transporter, EamA-like family.
       0.520
Bccel_4735
Phosphonate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: ABC transporter; SMART: AAA ATPase.
   
  
 0.511
Bccel_3557
Hypothetical protein; KEGG: alpha/beta hydrolase.
  
    0.504
Bccel_3802
PFAM: Protein of unknown function DUF2089; KEGG: hypothetical protein.
 
     0.465
Bccel_3515
PFAM: homoserine dehydrogenase, homoserine dehydrogenase NAD-binding protein; KEGG: homoserine dehydrogenase.
   
  0.452
Bccel_3936
PFAM: homoserine dehydrogenase, homoserine dehydrogenase NAD-binding protein; KEGG: homoserine dehydrogenase.
   
  0.452
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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