STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1880KEGG: hypothetical protein; PFAM: S-adenosylmethionine-dependent methyltransferase; SMART: PUA domain containing protein. (389 aa)    
Predicted Functional Partners:
Bccel_1889
TIGRFAM: pseudouridine synthase Rsu; PFAM: pseudouridine synthase, RNA-binding S4 domain protein; KEGG: pseudouridine synthase family protein; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.
 
 
 
 0.484
Bccel_3987
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
    
  0.474
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
  0.471
Bccel_1890
KEGG: RNA methylase; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein.
 
  
 0.471
Bccel_1879
PFAM: protein of unknown function DUF6 transmembrane; KEGG: transporter, EamA-like family.
       0.456
Bccel_3762
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.436
Bccel_3520
TIGRFAM: FolC bifunctional protein; KEGG: bifunctional folylpolyglutamate synthase/dihydrofolate synthase; PFAM: Mur ligase middle domain protein, cytoplasmic peptidoglycan synthetase domain protein.
  
 
  0.422
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.