STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1889TIGRFAM: pseudouridine synthase Rsu; PFAM: pseudouridine synthase, RNA-binding S4 domain protein; KEGG: pseudouridine synthase family protein; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family. (252 aa)    
Predicted Functional Partners:
Bccel_4555
KEGG: exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth, exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
    0.813
cmk
TIGRFAM: cytidylate kinase; HAMAP : Cytidylate kinase; KEGG: cytidylate kinase; PFAM: cytidylate kinase region.
 
  
 0.793
Bccel_1888
PFAM: Methyltransferase domain; KEGG: SAM dependent methyltransferase.
  
    0.774
der
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.733
scpB
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.657
Bccel_1890
KEGG: RNA methylase; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein.
     
 0.628
Bccel_0661
KEGG: hydrogenase maturation GTPase HydF; TIGRFAM: [FeFe]-hydrogenase H-cluster maturation GTPase HydF, small GTP-binding protein; PFAM: GTP1/OBG protein.
  
  
 0.559
Bccel_1880
KEGG: hypothetical protein; PFAM: S-adenosylmethionine-dependent methyltransferase; SMART: PUA domain containing protein.
 
 
 
 0.484
Bccel_0559
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tRNA/rRNA methyltransferase (SpoU).
 
 
 
 0.446
Bccel_1724
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
 
 
 0.441
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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