Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1929PFAM: Leucine rich repeat 4; KEGG: hypothetical protein. (670 aa)    
Predicted Functional Partners:
Bccel_1293
PFAM: leucine-rich repeat-containing protein; KEGG: small GTP-binding protein.
  
   
 0.767
Bccel_1928
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
       0.705
Bccel_3191
Thermitase; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, cellulosome anchoring protein cohesin region; KEGG: subtilisin-like serine protease; SMART: Hedgehog/intein hint domain-containing protein; Belongs to the peptidase S8 family.
 
 0.645
Bccel_1793
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, S-layer domain-containing protein; KEGG: subtilisin-like serine protease; Belongs to the peptidase S8 family.
 
 0.639
Bccel_5402
Thermitase; KEGG: subtilisin-like serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, cellulosome anchoring protein cohesin region, peptidase domain protein; Belongs to the peptidase S8 family.
 
 0.638
Bccel_4472
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: subtilisin-like serine protease.
 
 0.635
Bccel_5515
TIGRFAM: RHS repeat-associated core domain-containing protein, YD repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, regulator of chromosome condensation RCC1, Kelch repeat type 1-containing protein, YD repeat-containing protein; KEGG: RHS repeat-associated core domain-containing protein; SMART: Kelch repeat type 1-containing protein.
 
 0.635
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
    
 0.598
Bccel_4491
KEGG: hypothetical protein.
    
 0.584
Bccel_4135
TIGRFAM: RHS repeat-associated core domain-containing protein, YD repeat protein; PFAM: Ig domain protein group 2 domain protein, YD repeat-containing protein, SH3 domain protein; KEGG: Rhs family protein; SMART: Ig domain protein group 2 domain protein, SH3 domain protein, Fibronectin type III domain protein, Hedgehog/intein hint domain-containing protein.
  
 0.578
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.